High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator.

Publication Year: 2024

DOI:
10.1371/journal.pgen.1011129

PMCID:
PMC10861045

PMID:
38346089

Journal Information

Full Title: PLoS Genet

Abbreviation: PLoS Genet

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
Transparency Indicators
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Core Indicators
Evidence found in paper:

"data availability raw whole genome sequence data from parent-offspring trios are available on the ncbi short read archive (bioproject id prjna1064695).; data availability raw whole genome sequence data from parent-offspring trios are available on the ncbi short read archive (bioproject id prjna1064695). scripts and data relating to census population size analysis are available on github: https://github com/ymbozec/acanthaster_gbr_abundance .; scripts and data relating to census population size analysis are available on github: https://github com/ymbozec/acanthaster_gbr_abundance . file s1 table (xlsx data availability raw whole genome sequence data from parent-offspring trios are available on the ncbi short read archive (bioproject id prjna1064695"

Evidence found in paper:

"scripts relating to mutation rate estimation are available on github ( https://github com/lucieabergeron/germline_mutation_rate ).; scripts and data relating to census population size analysis are available on github: https://github com/ymbozec/acanthaster_gbr_abundance .; scripts relating to mutation rate estimation are available on github ( https://github com/lucieabergeron/germline_mutation_rate ).; scripts and data relating to census population size analysis are available on github: https://github com/ymbozec/acanthaster_gbr_abundance .; all scripts are available on github ( https://github com/lucieabergeron/germline_mutation_rate )."

Evidence found in paper:

"The authors have declared that no competing interests exist."

Evidence found in paper:

"This work was supported by the Australian Research Council (ARC DP190101593) granted to C.R., S.U., and G.W. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. I.P. and S.M.H. received salary from the funders."

Protocol Registration
Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025