SSBlazer: a genome-wide nucleotide-resolution model for predicting single-strand break sites.

Authors:
Xu S; Wei J; Sun S; Zhang J; Chan TF and 1 more

Journal:
Genome Biol

Publication Year: 2024

DOI:
10.1186/s13059-024-03179-w

PMCID:
PMC10863285

PMID:
38347618

Journal Information

Full Title: Genome Biol

Abbreviation: Genome Biol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Evidence found in paper:

"we first collected all the available genomes of vertebrates (212 reference genomes) from the genbank and refseq database using python scripts ( https://github com/kblin/ncbi-genome-download ).; the source code of ssblazer is available at https://github com/sxu99/ssblazer ; it is also hosted at here [ 48 ] for an archived version."

Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationNot applicable. Competing interestsThe authors declare that they have no competing interests. Competing interests The authors declare that they have no competing interests."

Evidence found in paper:

"Funding This work was funded by the Chinese University of Hong Kong (4937025, 4937026, 5501517, 5501329). The work described in this paper was partially supported by a grant from the Research Grants Council of the Hong Kong Special Administrative Region, China [Project No.: CUHK 24204023], and a grant from Innovation and Technology Commission of the Hong Kong Special Administrative Region, China [Project No.: GHP/065/21SZ]. J.Z. and TF.C. are supported by the Innovation and Technology Commission (ITC), Hong Kong Special Administrative Region Government (HKSAR) to the State Key Laboratory of Agrobiotechnology (CUHK). Any opinions, findings, conclusions, or recommendations expressed in this publication do not reflect the views of HKSAR or ITC."

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Open Access
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Last Updated: Aug 05, 2025