Transcriptomic analysis of intestinal organoids, derived from pigs divergent in feed efficiency, and their response to Escherichia coli.

Authors:
Madsen O; Rikkers RSC; Wells JM; Bergsma R; Kar SK and 4 more

Journal:
BMC Genomics

Publication Year: 2024

DOI:
10.1186/s12864-024-10064-0

PMCID:
PMC10863143

PMID:
38350904

Journal Information

Full Title: BMC Genomics

Abbreviation: BMC Genomics

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
Transparency Indicators
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Core Indicators
Evidence found in paper:

"availability of data and materials the rna-seq data describe in this study is available by the following sra/ena accession prjeb57598 ( https://www ebi ac uk/ena/browser/view/prjeb57598 ). availability of data and materials the rna-seq data describe in this study is available by the following sra/ena accession prjeb57598"

Code Sharing
Evidence found in paper:

"Declarations Ethics approval and consent to participateIn this study, slaughterhouse material has been collected to generate organoids. According to national legislation, slaughterhouse material do not require permission under the Law of Animal Experiments. Consent for publicationNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Evidence found in paper:

"Funding The current study was funded by Breed4food."

Protocol Registration
Open Access
Paper is freely available to read
Additional Indicators
Replication
Novelty Statement
Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025