pyHiM: a new open-source, multi-platform software package for spatial genomics based on multiplexed DNA-FISH imaging.

"our trained stardist dl networks were packed with pyhim and are also available from our pyhim osf repository.; the 0 9 1 release of pyhim is permanently available at: https://osf io/updfw (10 17605/osf io/updfw).; dl networks trained for pyhim are available at our osf repository: https://osf io/ugpyh/ [ 27 ].; minimal datasets for multiplexed dna-fish data are available from https://osf io/6egdc/ [ 28 ]. availability of data and materials the latest stable and development versions of pyhim are publicly available at our github repository: https://github com/marcnol/pyhim [ 25 ]."

"availability of data and materials the latest stable and development versions of pyhim are publicly available at our github repository: https://github com/marcnol/pyhim [ 25 ]."

"Declarations Ethics approval and consent to participateEthical approvals were not needed for this study. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests. "

"Funding This project was funded by the European Union’s Horizon 2020 Research and Innovation Program (EpiScope, Grant ID 724429, M.N.). We acknowledge the Bettencourt-Schueller Foundation for their prize ‘Coup d'élan pour la recherche Française’ and the France-BioImaging infrastructure supported by the French National Research Agency (grant ID ANR-10-INBS-04, “Investments for the Future”) for their funding through the cloudFISH project."