Dissecting the sequence and structural determinants guiding m6A deposition and evolution via inter- and intra-species hybrids.

Publication Year: 2024

DOI:
10.1186/s13059-024-03182-1

PMCID:
PMC10870504

PMID:
38360609

Journal Information

Full Title: Genome Biol

Abbreviation: Genome Biol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
Transparency Indicators
Click on green indicators to view evidence text
Core Indicators
Evidence found in paper:

"availability of data and materials the datasets generated in this study for analyzing m6a and rna expression are deposited on gene expression omnibus (geo) under accession number gse232450 [ 55 ].; the massively parallel reporter assay were deposited in geo database (accession number gse204980 [ 6 ]) m6a-qtls data were obtained from geo database (accession number gse125377 [ 22 ]). the source code gene annotation and data used in this study are freely available on zenodo [ 56 ] and github under the mit license [ 57 ]. the source code gene annotation and data used in this study are freely available on zenodo [ 56 ] and github under the mit license [ 57 ]. availability of data and materials the datasets generated in this study for analyzing m6a and rna expression are deposited on gene expression omnibus (geo) under accession number gse232450"

Evidence found in paper:

"the source code gene annotation and data used in this study are freely available on zenodo [ 56 ] and github under the mit license [ 57 ]."

Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Evidence found in paper:

"Funding Open access funding provided by Weizmann Institute of Science. SS is funded by the Israel Science Foundation (grant no. 913/21), the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant no. 101000970)."

Protocol Registration
Open Access
Paper is freely available to read
Additional Indicators
Replication
Novelty Statement
Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025