A comparison of marker gene selection methods for single-cell RNA sequencing data.

Publication Year: 2024

DOI:
10.1186/s13059-024-03183-0

PMCID:
PMC10895860

PMID:
38409056

Journal Information

Full Title: Genome Biol

Abbreviation: Genome Biol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Core Indicators
Evidence found in paper:

"availability of data and materials all code used in the analyses presented in this paper is available on gitlab under a mit licence https://gitlab svi edu au/biocellgen-public/mage_2020_marker-gene-benchmarking ([ 76 ]) with a snapshot on zenodo [ 77 ].; processed data files (in rds format) are available from zenodo (10 5281/zenodo 6513335 [ 90 ])."

Code Sharing
Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationNot applicable. Competing interestsWhile this manuscript was under consideration for publication DJM became an Editorial Board member of Genome Biology. JMP declares no competing interests. Competing interests While this manuscript was under consideration for publication DJM became an Editorial Board member of Genome Biology. JMP declares no competing interests."

Evidence found in paper:

"Funding This work was supported by the Australian National Health and Medical Research Council [GNT1195595, GNT1112681, and GNT1162829 awarded to DJM]; DJM is further supported by the Baker Foundation, and by Paul Holyoake and Marg Downey through a gift to St Vincent’s Institute of Medical Research."

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Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025