Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing.

Journal Information

Full Title: BMC Genomics

Abbreviation: BMC Genomics

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
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Evidence found in paper:

"the mitochondrial genome is available at genbank accession or906199 as well as at 10 5281/zenodo 10151798. funding - fdep c2002 to muller traylor-knowles rosales and studivan - fdep c1fb43 to studivan rosales muller and williams - oar omics to studivan - nsf award #1951826 to traylor-knowles - revive and restore catalyst award to traylor-knowles data availability the o faveolata de-novo genome assembly presented here is publicly available at prjna970355 on the ncbi as well as at 10 5281/zenodo 10151798.; the mitochondrial genome is available at genbank accession or906199 as well as at 10 5281/zenodo 10151798. file 6 ). briefly all reference genomes were concatenated into one fasta data availability the o faveolata de-novo genome assembly presented here is publicly available at prjna970355"

Evidence found in paper:

"all program versions are available in supplementary file 7 and in the github repository. all program versions are available in supplementary file 7 and in the github repository."

Evidence found in paper:

"Declarations Ethics approval and consent to participateGamete bundles collections were conducted under permit FKNMS-2018-163-A1. Fragments of Orbicella faveolata exposed to different biotic and abiotic perturbations were collected as corals of opportunity with permission by the Florida Fish and Wildlife Conservation Commission. Consent for publicationNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Evidence found in paper:

"Funding - FDEP C2002 to Muller, Traylor-Knowles, Rosales, and Studivan - FDEP C1FB43 to Studivan, Rosales, Muller, and Williams - OAR Omics to Studivan - NSF Award #1951826 to Traylor-Knowles - Revive and Restore Catalyst Award to Traylor-Knowles"

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Paper is freely available to read
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Last Updated: Aug 05, 2025