RNA-seq analysis reveals narrow differential gene expression in MEP and MVA pathways responsible for phytochemical divergence in extreme genotypes of Thymus daenensis Celak.

Journal Information

Full Title: BMC Genomics

Abbreviation: BMC Genomics

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
Transparency Indicators
Click on green indicators to view evidence text
Core Indicators
Evidence found in paper:

"data availability the datasets generated and analyzed in the current project (prjna950567) are deposited in the ncbi sra repository.; the data released publicly are now available at the following accession numbers: (read 1: srr24037549 read 2: srr24039021 read 3: srr24039245 read 4: srr24040063). data availability the datasets generated and analyzed in the current project (prjna950567"

Code Sharing
Evidence found in paper:

"Declarations Ethics approvalAll procedures for the collection and propagation of plant material were followed in accordance with the Department of Environment (DOE) guidelines of Iran. Permissions for collection of biosamples were also obtained from the ethics committee of the University of Tehran. Consent for publicationNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Evidence found in paper:

"Funding This research received no external funding resources."

Protocol Registration
Open Access
Paper is freely available to read
Additional Indicators
Replication
Novelty Statement
Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025